PUBLICATIONS

24. Barkataki, K. and Panagiotou, E., 2022, The Jones polynomial of collections of open curves in 3-space, (submitted) [link to preprint]

23. Herschberg, T., Pifer, K. and Panagiotou, E., 2022, A computational package for measuring Topological Entanglement in Polymers, Proteins and Periodic systems (TEPPP), (submitted) 

22. Smith, P. and Panagiotou, E., 2022, The second Vassiliev measure of uniform random walks and polygons in confined space J. Phys. A. Math. Theor. 55 095601 [link to full paper

21. Wang, J. and Panagiotou, E., 2022, The protein folding rate and the geometry and topology of the native state, Scientific Reports 12 6384 [link to full paper]

20. Baldwin, Q., Sumpter, B. G. and Panagiotou E., 2022, The local topological free energy of the SARS-CoV-2 spike protein Polymers 14 (15) 3014 [link to full paper]

19. Panagiotou, E. and Kauffman, L. H., 2021, Vassiliev measures of complexity for open and closed curves in 3-space, Proc. R. Soc. A 477, 20210440 [link to full paper]

18. Herschberg, T., Carrillo, J-M., Sumpter, B. G., Panagiotou, E. and Kumar, R.,  2021, Topological Effects Near Order-Disorder Transitions in Symmetric Diblock Copolymer Melts, Macromoelcules, 54, 16, 7492 [link to full paper]

17. Panagiotou, E., Vuong, V. Q., Irle, S. and Sumpter, B. G., 2021, Geometry as a screening tool for strong binders to the SARS-CoV-2 Spike protein (submitted)

16. Baldwin, Q. and Panagiotou E., 2021, The local topological free energy of proteins,  J. Theor. Biology 529, 110854 [link to full paper]

15. Panagiotou E. and Kauffman L. H., 2020, Knot polynomials of open and closed curves Proc. R. Soc. A 476 20200124 [link to preprint][link to full paper]

14. Panagiotou, E. and Plaxco, K. W., 2020, A topological study of protein folding kinetics Topology and Geometry of Biopolymers, AMS Contemporary Mathematics Series 746 [link to preprint][link to full paper]

13. Panagiotou E., Delaney K. T. and Fredrickson G. H., 2019, Theoretical prediction of an isotropic to nematic phase transition in bottlebrush homopolymer melts, J. Chem. Phys. 151, 094901[link to full paper]

12. Panagiotou E., Millett K. C. and Atzberger P., 2019, Topological Methods for Polymeric Materials: Characterizing the Relationship Between Polymer Entanglement and Viscoelasticity, Polymers ,11(3), 437. [link to full paper]

 

11. Panagiotou E., 2019, Topological entanglement and its relation to polymer material properties Knots, Low-Dimensional Topology and Applications,Knots in Hellas II, Springer Proceedings in Mathematics and Statistics [link to full paper]

 

10. Panagiotou E. and Millett K. C., 2018, Linking matrices in systems with periodic boundary conditions J. Phys. A: Math. Theor. 51 225001[link to full paper]

9. Millett K. C. and Panagiotou E., 2016, Linking in systems with one-dimensional periodic boundaries, Algebraic Modeling of Topological and Computational Structures and Applications, PROMS [link to full paper][link to preprint]

8. Millett K. C. and Panagiotou E., 2016, Entanglement transitions in one dimensional confined flows, Fluid Dyn. Res. 50 011416 [link to full paper]

7. Igram S., Millett K. C. and Panagiotou E., 2016, Resolving critical degrees of entanglement in olympic rings systems, J. Knot Theory Ramif. 25 14. [link to full paper]

6. Panagiotou E. 2015, The linking number in systems with periodic boundary conditions, J. Comp. Phys. 300 533-573. [link to full paper]

5. Panagiotou E. and Kr\"oger M., 2014, Pulling force-induced elongation and alignment effects on entanglement and knotting characteristics of linear polymers in a melt Phys. Rev. E  90 042602. [link to full paper]

4. Panagiotou E., Kr\"oger M and Millett K. C., 2013, Writhe and mutual entanglement combine to give the entanglement length Phys. Rev. E 88 062604. [link to full paper]

3. Panagiotou E., Millett K. C. and Lambropoulou S., 2013, Quantifying entanglement for collections of chains in models with periodic boundary conditions Procedia IUTAM: Topological Fluid Dynamics II 7 pp.251-260. [link to full paper]

2. Panagiotou E., Tzoumanekas C., Lambropoulou S., Millett K. C. and Theodorou D. N., 2011, A study of the entanglement in systems with periodic boundary conditions Prog. Theor. Phys. Supplement 191 pp.172-181. [link to full paper]

1. Panagiotou E., Millett K. C. and Lambropoulou S, 2010, The mean squared linking number and the writhe of uniform random walks in confined space J. Phys. A:Math. Theor. 43 045208-30. [link to full paper]

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